| 序号  | 论文专著名称  | 刊名  | 作者  | 年卷页码(xx年xx卷xx页)  | 发表时间  | 通讯作者  | 第一作者  | 
| 1 | Semi-supervised clustering algorithm for community structure detection in complex networks | Physica A | Xiaoke Ma*, Lin Gao, Xuerong Yong, Lidong Fu | 389:187--197 | 2010 | 马小科  | 马小科  | 
| 2 | Nonnegative matrix factorization algorithms for link prediction in temporal networks using graph communicability | Pattern Recognition | Xiaoke Ma*, Penggang Sun, Guimin Qin. | 71(2017)361-374 | 2017 | 马小科  | 马小科  | 
| 3 | Binary matrix factorization for analyzing gene expression data | Data Mining and Knowledge Discovery | Zhong-Yuan Zhang, Tao Li*, Chris Ding, Xiao-Wen Ren, Xiang-Sun Zhang | 20:28 | 2010 | 张忠元  | 李涛  | 
| 4 | Overlapping community detection in complex networks using symmetric binary matrix factorization | Phyiscal Review E | Zhong-Yuan Zhang*, Yong Wang, Yong-Yeol Ahn | 87(6):062803 | 2013 | 张忠元  | 张忠元  | 
| 5 | Non-negative Tri-factor tensor decomposition with applications | Knowledge and Information Systems  | Zhong-Yuan Zhang  Tao Li Chris Ding  | 34:243-265 | 2013 | 张忠元  | 李涛  | 
| 6 | Community structure detection in complex networks with partial background information | Europhysics Letters | Zhong-Yuan Zhang | 101(4) : 48005  | 2013 | 张忠元  | 张忠元  | 
| 7 | An Integrative Framework for Protein Interaction Network and Methylation Data to Discover Epigenetic Modules | IEEE/ACM Transactions on Computational Biology and Bioinformatics  | Xiaoke Ma*, Penggang Sun, Zhong-Yuan Zhang | 16(6):1855-1866 | 2019 | 马小科  | 马小科  | 
| 8 | Predicting protein complexes in protein interaction networks using a core-attachment algorithm based on graph communicability | Information Sciences | Xiaoke Ma, Lin Gao | 189:233--254 | 2012 | 马小科  | 马小科  |